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Genomics

High-resolution structural variant detection and automated scWGS

scWGS, structural variant detection, and bespoke DNA analysis.

We offer a fully automated single-cell Whole Genome Sequencing (scWGS) pipeline developed in-house, leveraging our proprietary integration of the Aneufinder algorithm for Copy Number Variation (CNV) detection. Our platform resolves structural variants and aneuploidy down to 40kb in individual cells, providing unparalleled insights into cancer evolution and genomic instability. Complementing this, we offer Shallow Mini-Bulk WGS for cost-effective profiling and Long-Read DNA Sequencing (Oxford Nanopore) for complex structural analysis and methylation profiling.

Genomics at the iPsomics lab
Core expertise

Automated single-cell genomics

Fully automated scWGS pipeline

End-to-end automation from single-cell sorting to library prep, minimizing bias and maximizing throughput for tumor heterogeneity studies.

Proprietary bioinformatics

Our in-house pipeline utilizes advanced algorithms (based on Aneufinder) to detect CNVs, aneuploidy, and subclonal populations with high precision, even in low-coverage data.

Long-Read structural analysis

Oxford Nanopore reads (>100kb) to resolve complex rearrangements, translocations, and simultaneous DNA methylation profiling.

Bespoke DNA & Chromatin Solutions

Custom pipelines for Whole Exome Sequencing (WES), circulating tumor DNA (ctDNA/cfDNA) analysis, and targeted structural variant detection.

Applications

Research applications

Cancer clonal evolution

Tracking tumor progression, resistance mechanisms, and metastatic spread at single-cell resolution.

Liquid Biopsy (ctDNA)

Detecting minimal residual disease and early-stage cancer signals from blood samples.

Coding region deep dive

High-depth Exome Sequencing for identifying somatic mutations in driver genes and rare variants.

Genomic Instability in Organoids

Characterizing large-scale chromosomal aberrations in 3D culture models to ensure model fidelity.

Epigenetic Profiling

Integrating ATAC-seq data to map chromatin accessibility and regulatory landscapes in disease contexts.

Workflow

Cell to structural variant map

Our automated scWGS pipeline — from single-cell isolation to copy number calling.

1
Sample Intake
Isolation of single cells/nuclei from fresh/frozen tissues, organoids, cryopreserved viable cells
2
Single-cell Sorting
High purity / doublet removal / population selection
3
High-throughput Library Prep
In-house automation / Bias-minimized, cost-effective
4
Sequencing
40kb Resolution
5
Structural Variant Calling
CNV Detection / Subclonal mapping

Not sure your sample qualifies? Contact us to check →

Genomics — common questions

What resolution can you achieve with scWGS?

Our automated pipeline detects copy number variations down to 40kb resolution in individual cells, using our proprietary Aneufinder-based analysis.

Do you offer whole exome sequencing?

Yes. We offer WES alongside scWGS and can combine both approaches for comprehensive genomic profiling.

Get in touch

Ready to build your Genomics model?

Tell us about your project and we'll scope a solution for your lab.